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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55902483_55902818_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55902483 - 55902818
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCTTAAAA
Flanking Amino Acid:
LDFMEKRIDKGSSYREGLTP
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.1
0.61
0.9
75.2
39
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
88
1.19
1.1
93.09
25.3

Associated Gene:

Gene:
RIC8B
Ensembl Gene ID:
ENSAPLG00000008075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008413
55889930 - 55923703
33774