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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55902973_55907340_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55902973 - 55907340
Intron Length:
4368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
AAATCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GAATCTTTAAAA
Flanking Amino Acid:
PTEDKTEELHSNAINLLSNV
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
70.7
0.47
1
66.3
44.1
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
65.9
0.5
1.4
67.93
37.6

Associated Gene:

Gene:
RIC8B
Ensembl Gene ID:
ENSAPLG00000008075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008413
55889930 - 55923703
33774