Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55930265_55946209_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55930265 - 55946209

Intron Length:

15945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

AATTCTTTAATT

Flanking Amino Acid:

YSPYHRSSSQYPFNSPTSRM

Intron Amino Acid Position:

503

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.04

0.8

78.8

38.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

89.5

0.89

0.7

85.1

27.9

Minor 5ss

39.6

-1.2

2.8

49.7

46.6

Minor BPS

81.1

1.05

87.51

31.3

Associated Gene:

Gene:

RFX4

Ensembl Gene ID:

ENSAPLG00000005849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006052

55929992 - 55980414

50423