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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55952876_55959654_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55952876 - 55959654
Intron Length:
6779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTCCTTTAATG
Flanking Amino Acid:
PEYGGIAATTGAMQSYTWSL
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.9
0.65
0.9
73.9
36.8
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
70.3
0.5
1.3
69.55
38

Associated Gene:

Gene:
RFX4
Ensembl Gene ID:
ENSAPLG00000005849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006052
55929992 - 55980414
50423