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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55959817_55960780_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55959817 - 55960780
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCACCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTCTCACCC
Flanking Amino Acid:
MRAMKGEGSTAEIREEIILS
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77
0.61
0.8
70
30.5
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
55.3
0.15
1.8
71.76
39.3

Associated Gene:

Gene:
RFX4
Ensembl Gene ID:
ENSAPLG00000005849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006052
55929992 - 55980414
50423