Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55960901_55966619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55960901 - 55966619

Intron Length:

5719

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTACTTTCA

5'SS Class:

major

3'SS Sequence:

ACTTTACTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTCACTTTACTA

Flanking Amino Acid:

DMTLHSAPSFGSFHLIHLMF

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

63.4

37.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

71.9

0.49

41.2

Minor 5ss

39.6

-1.2

2.9

48.1

42.7

Minor BPS

57.7

0.24

1.6

67.24

40.1

Associated Gene:

Gene:

RFX4

Ensembl Gene ID:

ENSAPLG00000005849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006052

55929992 - 55980414

50423