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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55966738_55968165_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55966738 - 55968165
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGATAT
U12 Branch Point Sequence:
TTAGATATATCT
Flanking Amino Acid:
DSMVDRCVVKVAAKRQGSLK
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70
42.1
Major BPS
56.3
0.16
1.2
53
42.8
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
30
-2.3
2.7
33.2
42
Minor BPS
44.7
-0.3
2
66.6
43.9

Associated Gene:

Gene:
RFX4
Ensembl Gene ID:
ENSAPLG00000005849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006052
55929992 - 55980414
50423