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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55968261_55971265_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55968261 - 55971265
Intron Length:
3005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTTGTCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AAGTACTGAAGT
Flanking Amino Acid:
REEHRKLIIQLYQEFDHLLE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69
34.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
75.7
0.58
1
69.2
41.8
Minor 5ss
34.1
-1.8
3.4
47.8
41.1
Minor BPS
48.6
-0
1.9
65.83
44

Associated Gene:

Gene:
RFX4
Ensembl Gene ID:
ENSAPLG00000005849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006052
55929992 - 55980414
50423