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Intron Name: Anas_platyrhynchos_platyrhynchos_1_55971411_55972677_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55971411 - 55972677

Intron Length:

1267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAATATT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGGATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AAACCATGAAAT

Flanking Amino Acid:

RQTSLNHLCQASRTVIHSAD

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

27.5

Major BPS

70.8

0.52

70.6

31.6

Major PPT

0.54

65.6

44.4

Minor 5ss

42.7

-0.8

60.1

38.5

Minor BPS

46.9

-0.1

1.8

62.68

39.7

Associated Gene:

Gene:

RFX4

Ensembl Gene ID:

ENSAPLG00000005849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006052

55929992 - 55980414

50423