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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55972737_55974561_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55972737 - 55974561
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
CAGTATGTAAAT
Flanking Amino Acid:
PENLRNIKFELSRRFSQILR
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
80.5
0.69
0.7
76.8
25.5
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
43.7
-0.4
2.2
58.87
44.2

Associated Gene:

Gene:
RFX4
Ensembl Gene ID:
ENSAPLG00000005849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006052
55929992 - 55980414
50423