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Intron Name: Anas_platyrhynchos_platyrhynchos_1_55977180_55979229_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55977180 - 55979229

Intron Length:

2050

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGTTA

5'SS Class:

strong_major

3'SS Sequence:

CTCTGGATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAA

U12 Branch Point Sequence:

TGTCACTTAAAC

Flanking Amino Acid:

DTVIRANFDEVQSFLLHFWQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

77.5

33.3

Major BPS

0.47

69.9

32.6

Major PPT

72.8

0.51

65.4

39.9

Minor 5ss

46.4

-0.4

3.1

63.9

47.7

Minor BPS

62.1

0.36

1.6

71.75

38.2

Associated Gene:

Gene:

RFX4

Ensembl Gene ID:

ENSAPLG00000005849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006052

55929992 - 55980414

50423