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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56013266_56029650_R

Intron Information:

Intron Rank:
135726
Intron Class:
major
Intron Phase:
Intron Coordinates:
56013266 - 56029650
Intron Length:
16385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAAGACAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
42.6
-0.4
2.1
58.74
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020416
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041162
56012904 - 56029932
17029