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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56042222_56044160_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56042222 - 56044160
Intron Length:
1939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGACAAT
U12 Branch Point Sequence:
CAGACAATGAGT
Flanking Amino Acid:
GQCGLLGYSGWTVTTHQWWS
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
46.5
-0.2
1.3
50.9
41
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
39.3
-0.7
2
50.82
43

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037582
56041865 - 56111370
69506