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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56053049_56062667_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56053049 - 56062667
Intron Length:
9619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGTTTGTGAATT
Flanking Amino Acid:
DKFSSRHGQKGVCGLIVPQE
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.4
32.4
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
44.1
-0.6
2.9
58.3
46.6
Minor BPS
53.3
0.18
2.1
77.06
39.7

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506