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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56064163_56064547_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56064163 - 56064547
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
CTGTCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATATATTTAAAT
Flanking Amino Acid:
ILDADGICSPGEKVENKQVL
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
68.6
37.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.1
0.54
0.9
69.1
37
Minor 5ss
39.8
-1.1
2.8
46.1
44.4
Minor BPS
63.1
0.49
1.6
77.9
37.7

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000005527
56038943 - 56111370
72428