About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56066821_56073248_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56066821 - 56073248
Intron Length:
6428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
YQCAMGKQAMGTIGYNQRNR
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.4
0.75
0.9
78.2
34.4
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975