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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56079294_56081626_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56079294 - 56081626
Intron Length:
2333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
TCTTTCTGAATA
Flanking Amino Acid:
YPNVFLVFLNGNILGVIRDH
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
71.8
0.49
0.9
69.8
35.4
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
69.5
0.61
1.4
75.52
36.2

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000005527
56038943 - 56111370
72428