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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56083264_56086297_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56083264 - 56086297
Intron Length:
3034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGCTCTACA
Flanking Amino Acid:
TNGMVNAISTGNWSLKRFKM
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.7
0.83
0.7
80.7
31.4
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
52.9
0.09
2.3
75.86
41.2

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033758
56039396 - 56111370
71975