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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56086460_56093376_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56086460 - 56093376
Intron Length:
6917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACGTAAT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTCCCTTAATG
Flanking Amino Acid:
LASTILTHVLLLSLLFEDLF
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
72.9
37.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
38.9
-1.2
3.1
56.5
42.2
Minor BPS
75.6
0.66
1.3
73.98
38.2

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033758
56039396 - 56111370
71975