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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56092148_56093376_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56092148 - 56093376
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGTTTGTTTACA
Flanking Amino Acid:
LASTILTHVLVKEFNFRAKC
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
72.9
37.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
38.9
-1.2
3.1
56.5
42.2
Minor BPS
51.4
0.04
2.3
71.5
40.4

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033064
56089258 - 56111370
22113
ENSAPLT00000005527
56038943 - 56111370
72428