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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56102400_56103089_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56102400 - 56103089
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATT
Flanking Amino Acid:
RKGTVGASVTSSTHEKKSRT
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.6
0.87
0.8
86.6
31.3
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
75.3
0.87
1
82.84
32

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037582
56041865 - 56111370
69506
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000033064
56089258 - 56111370
22113
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975