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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56106054_56108387_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56106054 - 56108387
Intron Length:
2334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGATG
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGACACCTAACT
Flanking Amino Acid:
NVTRPVSPHECRLRDMTYSA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
42
-0.9
3.1
57
47.4
Minor BPS
53.2
0.18
1.9
73.86
41.7

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000033064
56089258 - 56111370
22113
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506