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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56108464_56108945_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56108464 - 56108945
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAATA
Flanking Amino Acid:
TSDADPMWYLKYLNIYVGTP
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.2
0.5
1.1
64.5
45.9
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
58.4
0.26
1.4
64.09
36.8

Associated Gene:

Gene:
POLR3B
Ensembl Gene ID:
ENSAPLG00000005305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033758
56039396 - 56111370
71975
ENSAPLT00000033064
56089258 - 56111370
22113
ENSAPLT00000005527
56038943 - 56111370
72428
ENSAPLT00000044733
56039396 - 56111370
71975
ENSAPLT00000037582
56041865 - 56111370
69506