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Intron Name: Anas_platyrhynchos_platyrhynchos_1_56111087_56111298_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56111087 - 56111298

Intron Length:

212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

GCTGCTTTAAAC

Flanking Amino Acid:

QAAAPVNTVEEKWRLLPAFL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

0.7

0.9

79.6

29.1

Major PPT

82.7

0.73

0.9

80.2

37.3

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

59.4

0.28

1.6

63.9

41.8

Associated Gene:

Gene:

POLR3B

Ensembl Gene ID:

ENSAPLG00000005305

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037582

56041865 - 56111370

69506

ENSAPLT00000033758

56039396 - 56111370

71975

ENSAPLT00000033064

56089258 - 56111370

22113

ENSAPLT00000005527

56038943 - 56111370

72428

ENSAPLT00000044733

56039396 - 56111370

71975