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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56129932_56131835_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56129932 - 56131835
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAA
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
SVPLLEGMSKKTFDLKEALN
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.8
40.7
Major BPS
53
0.08
1
60.9
31.3
Major PPT
91.4
0.93
0.6
84.6
30.4
Minor 5ss
35.1
-1.7
3.4
49.3
40.8
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
TCP11L2
Ensembl Gene ID:
ENSAPLG00000002388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046519
56128506 - 56140879
12374
ENSAPLT00000021411
56128506 - 56143075
14570
ENSAPLT00000002441
56128506 - 56140879
12374