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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56134757_56135311_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56134757 - 56135311
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TTCCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTACTTTAAAC
Flanking Amino Acid:
KATDNIVELLRQIFHVLDLM
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.5
0.82
0.7
84.7
23.1
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
66.5
0.5
1.5
72.22
38.8

Associated Gene:

Gene:
TCP11L2
Ensembl Gene ID:
ENSAPLG00000002388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046519
56128506 - 56140879
12374
ENSAPLT00000021411
56128506 - 56143075
14570
ENSAPLT00000002441
56128506 - 56140879
12374