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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56135533_56136225_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56135533 - 56136225
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCCCCTACTT
Flanking Amino Acid:
AIKLFEEIKEILLSFLTPGA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
72.9
0.52
0.8
69.2
29.8
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
51.1
0.11
2
73.93
43.1

Associated Gene:

Gene:
TCP11L2
Ensembl Gene ID:
ENSAPLG00000002388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002441
56128506 - 56140879
12374
ENSAPLT00000046519
56128506 - 56140879
12374
ENSAPLT00000021411
56128506 - 56143075
14570