Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56136347_56137273_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56136347 - 56137273

Intron Length:

927

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

ACTTATTCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAT

U12 Branch Point Sequence:

CTGTCTGTAATT

Flanking Amino Acid:

CIKHEDLPQNSLVGTVKRIV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

72.1

0.55

1.2

73.3

39.1

Major PPT

75.4

0.57

0.9

68.9

36.2

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

57.1

0.3

74.76

43.2

Associated Gene:

Gene:

TCP11L2

Ensembl Gene ID:

ENSAPLG00000002388

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002441

56128506 - 56140879

12374

ENSAPLT00000046519

56128506 - 56140879

12374

ENSAPLT00000021411

56128506 - 56143075

14570