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Intron Name: Anas_platyrhynchos_platyrhynchos_1_56138910_56142221_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

56138910 - 56142221

Intron Length:

3312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

TTTTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAG

U12 Branch Point Sequence:

CTTTTGTGAGAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

57.3

0.18

1.7

57.1

49.4

Major PPT

90.9

0.92

0.7

88.9

28.1

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

42.9

-0.4

2.3

65.47

Associated Gene:

Gene:

TCP11L2

Ensembl Gene ID:

ENSAPLG00000002388

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021411

56128506 - 56143075

14570