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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56171234_56174595_R

Intron Information:

Intron Rank:
150932
Intron Class:
major
Intron Phase:
Intron Coordinates:
56171234 - 56174595
Intron Length:
3362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TCTGCTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
ATCTCTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.6
36.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
69.6
0.44
0.9
69
37
Minor 5ss
27.2
-2.6
3.3
31.5
42.2
Minor BPS
53.3
0.18
1.9
74.84
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040865
56170266 - 56174774
4509