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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56214302_56215550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56214302 - 56215550
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATAT
Flanking Amino Acid:
IVSAVHYCHKNGVVHRDLKL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.6
0.82
0.7
85
28.1
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
66
0.58
1.7
83.38
37.3

Associated Gene:

Gene:
NUAK1
Ensembl Gene ID:
ENSAPLG00000017168
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024025
56175202 - 56226106
50905