About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56215617_56222159_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56215617 - 56222159
Intron Length:
6543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTACAGAAGC
Flanking Amino Acid:
ILLDDNFNIKIADFGLSNLY
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.6
0.76
0.8
77.6
36.1
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
45.5
-0.3
2.1
62.55
42

Associated Gene:

Gene:
NUAK1
Ensembl Gene ID:
ENSAPLG00000017168
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024025
56175202 - 56226106
50905