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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56222684_56223952_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56222684 - 56223952
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TCTTTGTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAACT
Flanking Amino Acid:
GEYREPTQTSDARGLIRWML
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77
0.61
0.8
72.5
32.4
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
63.3
0.5
1.6
78.4
38.1

Associated Gene:

Gene:
NUAK1
Ensembl Gene ID:
ENSAPLG00000017168
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024025
56175202 - 56226106
50905