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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56463625_56468414_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56463625 - 56468414
Intron Length:
4790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCGG
5'SS Class:
major
3'SS Sequence:
TCTTTTGTCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTAACTAAAGC
Flanking Amino Acid:
LEEALQDSPQTRSLLSVFEE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.3
46.1
49.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.3
0.5
1.1
74.5
34
Minor 5ss
34.3
-1.8
3.5
47.2
48.2
Minor BPS
46.5
-0.2
2.1
60.92
43.8

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015786
56463571 - 56499661
36091