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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56468514_56478071_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56468514 - 56478071
Intron Length:
9558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATA
Flanking Amino Acid:
QAMQRVYGAQNEMCLATQQL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.8
0.78
0.8
80.6
31.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
66.7
0.52
1.5
77.76
32.3

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015786
56463571 - 56499661
36091