About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56478132_56478643_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56478132 - 56478643
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
SKQLLAYEKQHFALGKGDEE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028995
56473315 - 56499661
26347
ENSAPLT00000015786
56463571 - 56499661
36091