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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56484324_56484442_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56484324 - 56484442
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAAAA
Flanking Amino Acid:
LKDLFGLASNEHDVSMAKYS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.6
0.71
0.8
75.6
33.1
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
54.9
0.15
1.8
65.11
41.3

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028995
56473315 - 56499661
26347
ENSAPLT00000015786
56463571 - 56499661
36091