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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56492256_56493391_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56492256 - 56493391
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
ATCTTCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GAGTCTTTATCA
Flanking Amino Acid:
IQKAGYLNLRNKTGLVTTTW
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
69.2
41.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79
0.65
0.8
74.2
30.2
Minor 5ss
34.6
-1.8
2.9
41
39.2
Minor BPS
60
0.31
1.6
65.14
41.3

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028995
56473315 - 56499661
26347
ENSAPLT00000015786
56463571 - 56499661
36091