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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56497969_56498090_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56497969 - 56498090
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TATTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
DPQTQVTRISFELATVTQFA
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.7
0.8
0.8
77.4
41.1
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
APPL2
Ensembl Gene ID:
ENSAPLG00000015124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028995
56473315 - 56499661
26347
ENSAPLT00000015786
56463571 - 56499661
36091