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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56504335_56505759_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56504335 - 56505759
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTAAACATAATC
Flanking Amino Acid:
EENQEKKEKEEEAVKTSNGD
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.8
0.71
0.8
76.6
37.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
51.6
0.03
1.8
66.54
38.4

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450