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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56507033_56507496_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56507033 - 56507496
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GGTTTGTTAATT
Flanking Amino Acid:
AAFTDDGFAMGVAYILKLLD
Intron Amino Acid Position:
1053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.7
0.51
0.9
67
39
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
59.2
0.37
2.1
76.88
40

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450