About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56507594_56509174_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56507594 - 56509174
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTCACTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTCACT
Flanking Amino Acid:
RNFYIIVPPLTLNFVEHSIS
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.8
80.8
31
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
67.6
0.63
1.7
85.39
35.1

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450