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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56509323_56509859_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
56509323 - 56509859
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTAA
5'SS Class:
weak_major
3'SS Sequence:
TCATCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CATTGCTCATCC
Flanking Amino Acid:
GLSEETQKAARQLDSVLSDL
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
62.2
41
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
82.4
0.73
0.8
76.8
31.5
Minor 5ss
47.6
-0.2
2.9
64.5
46.9
Minor BPS
46.3
-0.3
2.2
59.63
45.3

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450