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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56510668_56511339_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56510668 - 56511339
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAATT
Flanking Amino Acid:
DQFRQLISQIGNAMGYVRMI
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.1
36.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.1
0.61
1
77.9
34.4
Minor 5ss
40.3
-1.1
2.9
52.8
44.2
Minor BPS
56.5
0.28
1.9
77.76
38.8

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450