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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56518409_56518547_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56518409 - 56518547
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATGTGCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTATTTTAGTT
Flanking Amino Acid:
RFFNRFIDIKAYVTHYLDKT
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.9
0.61
1
69.1
41.6
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
57.7
0.32
1.5
74.37
36.9

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450