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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56524338_56525614_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56524338 - 56525614
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCGGT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTACTTTATTT
Flanking Amino Acid:
LSNRCNVFIQGFLYAYSLST
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
64.9
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
38.7
-1.3
3.4
55.4
48.8
Minor BPS
60.6
0.41
1.6
76.03
41.4

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450