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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56525742_56527549_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
56525742 - 56527549
Intron Length:
1808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTGAAGT
Flanking Amino Acid:
FLQQKAQSLTKDMQSYYVFV
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.6
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
81.1
30.9
Minor 5ss
71.7
0.73
2
76.2
33
Minor BPS
55.1
0.24
1.8
76.87
39.8

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450