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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56527711_56528444_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56527711 - 56528444
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
YKSLLDVCKKVPAITLTANI
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.3
0.68
1
79.3
33.1
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450