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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5652978_5653325_R

Intron Information:

Intron Rank:
146784
Intron Class:
major
Intron Phase:
Intron Coordinates:
5652978 - 5653325
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATTGCT
5'SS Class:
major
3'SS Sequence:
TTTTACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
73.7
34.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
37.8
-1.4
3.3
55.3
42
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026290
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039832
5652885 - 5653720
836