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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56531743_56533056_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56531743 - 56533056
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTATT
5'SS Class:
major
3'SS Sequence:
GTTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTACAG
Flanking Amino Acid:
HQLAVLYTSNKNAPKIIETS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
86.5
28.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.8
0.83
0.8
80.7
35.9
Minor 5ss
43.4
-0.7
2.9
60.8
37.5
Minor BPS
51.8
-0
1.9
65.39
42.4

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450